A Look Back at the 2nd BDE Workshop on Big Data in Health, Demographic Change and Wellbeing

[reblogged from Big-Data-Europe.eu]

On 9 December 2016, the second workshop for the Big Data Europe Health, Demographic Change and Wellbeing societal challenge was held in Brussels. The aim of this workshop was to highlight progress from the BigDataEurope project in building the foundations of a generically applicable big data platform which can be applied across all Horizon 2020 societal challenges. This workshop specifically focused on health, and showcased our first pilot’s application to early bioscience research data.

The workshop in full effect

The workshop had 15 participants, from within the health domain and outside it, including many participants from the European Commission. Together we discussed different perspectives on how we may use appropriate H2020 instruments and work programmes to better integrate the ecosystem of linked data repositories, data management services and virtual collaboration environments to increase the pace of knowledge sharing in health.

The workshop featured presentations from BDE’s Simon Scerri and Aad Versteden on the general goals and progress of the BigDataEurope project and the BDE infrastructure respectively. After lunch, Ronald Siebes (BDE / VU Amsterdam) presented the first pilot in this specific domain. More information on that pilot can be found here. An extensive round-table discussion followed, in which possible options for new applications and connections were considered.

Snapshot of the SC1 pilot interface, as presented by Ronald Siebes

One question raised was whether the generic BDE infrastructure can be used by European SMEs. The fact that the BDE infrastructure is completely Open Source, very easy to install and features intuitive interface components makes re-use relatively simple even for smaller institutions and companies.

A significant part of the discussion focussed on possible new use cases for expanding the scope of the pilot. One suggestion was to look at post-hoc integration of clinical data, which represents a typical problem of data ‘variance’. This would require integrating information from different versions of medical questionnaires, which may be recorded or stored in different ways. Data provenance is also a key concern, as keeping a trail of what has happened to clinical data is crucial to tracking patients’ histories. Once integrated, this data could then be mined to identify biases or data patterns.

Finally, the workshop participants discussed potential connections to other European projects. Here many projects were mentioned including the MIDAS project, the Big-O project on childhood obesity, the PULSE projects and IMI / IMI2 projects including EMIF. We will be seeking collaborations with these projects and will continue to develop new and interesting Big Data use cases in this domain in the coming year.

More images can be found below: BDE Health Workshop SC 1.2

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Installing and Running the First Big-Data-Europe Health Pilot

[This blog post is reblogged from big-data-europe.eu and written by Ronald Siebes and Victor de Boer]

As previously announced, the pilot implementation for the Big-Data-Europe platform for Societal Challenge 1 (the Health domain) facilitates the Open PHACTS discovery Platform functionality.  The Open PHACTS platform is built for researchers in Drug Discovery. It uses databases of physicochemical and pharmacological properties stored in a RDF Triple Store. This interconnected data is exposed through a Linked Data API composed of interoperable data. The system caches query results via a Memcached module. In the context of the SC1 pilot, most functionalities of the platform is now successfully replicated via Docker containers on the BDE infrastructure.

The Open PHACTS platform architecture
The Open PHACTS platform architecture

Please do try this at home! The pilot can be installed on Linux (through Docker compose) or Windows (through Docker toolbox). Installations instructions are available on the pilot’s GitHub page.  By design the technology itself is independent from the domain. Once you got familiar with the code and got it running by yourself, you should have enough experience to upload your own Linked Data, and create your own API.

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BDE Webinar:  Big Data and the 7 Societal Challenges Out-of-the-box technology for the future

logo-BigDataEuropeAs the Big Data Europe project enters its second year, we’re doing everything we can to make it as simple as possible to get acquainted with the platform which is under development, and facilitate future deployments of our platform to support your Big Data pipelines.

We are therefore happy to introduce this quarterly series of technical webinars, where you can keep track of progress related to our technical developments and demonstrators in each of the seven societal challenges, ask questions, and provide valuable feedback. In addition, we will also cover other important developments in the area which are not necessarily related to our project.

Online Webinar: 02-03-2016, 14:00-15:00 CET

In the first webinar in this series, you will learn about:

  • the requirements we collected from the 7 Societal Challenges we are addressing
  • the technical building blocks of our Big Data Platform
  • how the above will be provided as a generic instance for customisation
  • an introduction to the 7 selected Pilot partners and the expected outcome

The one hour webinar is run by the Big Data Europe Project and presents inputs and presentations from experts responsible for the architecture, the implementation and the upcoming pilots roll-out. The audience will be given a chance to interact and the top questions will be answered by one of our dedicated technical and domain experts.

Registration is Free, click here register now!

We are looking forward to your participation.

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